| Name | Version | Summary | date |
| simsi-transfer |
0.6.1 |
Software-assisted reduction of missing values in phosphoproteomics and proteomics isobaric labeling data using MS2 spectrum clustering |
2024-04-05 10:44:13 |
| proteobench |
0.2.2b0 |
ProteoBench |
2024-02-16 13:50:12 |
| profasta |
0.0.4 |
A Python library for working with protein containing FASTA files. |
2024-02-16 12:18:34 |
| RIAssigner |
0.4.0 |
Python library for retention index calculation. |
2024-02-13 10:38:06 |
| picked-group-fdr |
0.6.6 |
Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments |
2024-02-09 16:21:22 |
| mass2chem |
0.5.0 |
Common utilities for interpreting mass spectrometry data |
2024-02-06 22:59:56 |
| pydiaid |
0.0.23 |
An open-source Python package of the AlphaPept ecosystem |
2024-01-10 13:53:46 |
| triqler |
0.7.3 |
Triqler: TRansparent Identification-Quantification-Linked Error Rates |
2024-01-04 10:51:19 |
| ms-entropy |
1.1.2 |
This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data. |
2023-12-23 06:55:16 |
| vimms |
2.1.4 |
A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics. |
2023-10-02 23:11:26 |
| UniDec |
6.0.4 |
Universal Deconvolution of Mass and Ion Mobility Spectra |
2023-09-20 23:29:34 |
| msstitch |
3.14 |
MS proteomics post processing utilities |
2023-09-04 10:12:05 |
| alphatims |
1.0.8 |
A Python package to index Bruker TimsTOF raw data for fast and easy accession and visualization |
2023-07-24 13:41:45 |
| proteomics-downstream-analysis |
0.1.3 |
A package for downstream data analysis of proteomics data |
2023-07-05 15:48:33 |
| DBDIpy |
1.2.2 |
A python package for the curation and interpretation of datasets from plasma ionisation mass spectrometric. |
2023-07-03 12:35:15 |
| beamspy |
1.2.0 |
Putative annotation of metabolites for mass spectrometry-based metabolomics datasets. |
2023-05-16 07:49:11 |
| proteomicruler |
0.1.2 |
Estimate copy number from deep profile MS experiment using the Proteomic Ruler algorithm from Wiśniewski, J. R., Hein, M. Y., Cox, J. and Mann, M. (2014) A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards. Mol Cell Proteomics 13, 3497–3506. |
2023-03-22 17:49:49 |
| opentimspy |
1.0.15 |
opentimspy: An open-source parser of Bruker Tims Data File (.tdf). |
2023-03-13 23:49:32 |
| matchmsextras |
0.4.1 |
Additional functionalities to be used with matchms |
2023-02-06 09:49:19 |
| spec2vec |
0.8.0 |
Word2Vec based similarity measure of mass spectrometry data. |
2023-01-19 09:19:03 |