| Name | Version | Summary | date |
| ms-file-reader |
0.1.0 |
Reads a few common file formats for processed mass spectra and generates consistent objects from them. |
2025-07-24 21:18:31 |
| ms2lda |
2.0.0 |
Unsupervised Substructure Discovery using Topic Modelling with Automated Annotation. |
2025-07-10 19:36:56 |
| instanovo |
1.1.0 |
InstaNovo enables diffusion-powered de novo peptide sequencing in large scale proteomics experiments |
2025-03-28 12:09:51 |
| alphamap |
0.1.13 |
None |
2025-02-19 21:30:28 |
| domaps |
1.0.4 |
Python library for dynamic organellar maps |
2025-02-01 17:25:03 |
| msstitch |
3.17 |
MS proteomics post processing utilities |
2025-02-01 10:04:50 |
| picked-group-fdr |
0.8.0 |
Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments |
2025-01-16 12:41:04 |
| mzspeclib |
1.0.3 |
HUPO-PSI Spectral library format |
2025-01-10 18:00:03 |
| triqler |
0.8.0 |
Triqler: TRansparent Identification-Quantification-Linked Error Rates |
2025-01-07 12:31:12 |
| UniDec |
8.0.0 |
Universal Deconvolution of Mass and Ion Mobility Spectra |
2024-12-27 23:28:24 |
| ms-entropy |
1.3.4 |
This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data. |
2024-12-12 18:34:28 |
| peptdeep |
1.3.1 |
The AlphaX deep learning framework for Proteomics |
2024-12-10 09:36:57 |
| alphadia |
1.9.1 |
A novel proteomics search engine for DIA data based on end-to-end transfer learning. |
2024-11-29 09:38:50 |
| mzx |
0.2.2 |
Easy to use Mass Spec conversion utility |
2024-11-16 04:40:57 |
| xlsxreport |
0.1.1 |
Automated generation of formatted excel reports from MS results |
2024-09-21 11:02:27 |
| alphaDIA |
1.7.2 |
A novel proteomics search engine for DIA data based on end-to-end transfer learning. |
2024-07-15 13:36:43 |
| MSPT |
1.1.0 |
MS Bias calculations using the Pascal Triangle |
2024-06-20 08:38:13 |
| simsi-transfer |
0.6.1 |
Software-assisted reduction of missing values in phosphoproteomics and proteomics isobaric labeling data using MS2 spectrum clustering |
2024-04-05 10:44:13 |
| profasta |
0.0.4 |
A Python library for working with protein containing FASTA files. |
2024-02-16 12:18:34 |
| RIAssigner |
0.4.0 |
Python library for retention index calculation. |
2024-02-13 10:38:06 |